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BIOE-PHD - Bioengineering (PhD)
Overview
Program Overview
Bioengineering is jointly supported by the School of Engineering and the School of Medicine. The facilities and personnel of the Department of Bioengineering are housed in the Shriram Center, James H. Clark Center, the William F. Durand Building for Space Engineering and Science, the William M. Keck Science Building, the Jerry Yang and Akiko Yamazaki Environment and Energy Building, and the Richard M. Lucas Center for Magnetic Resonance Spectroscopy and Imaging. The departmental headquarters is in the Shriram Center for Bioengineering and Chemical Engineering.
Students are expected to enter with a series of core competencies in mathematics, biology, chemistry, physics, computing, and engineering. Students entering the program are assessed by the examination of their undergraduate transcripts and research experiences. Specifically, the department requires that students have completed mathematics through multivariable calculus and differential equations, completed a series of undergraduate biology courses and completed physics, chemistry, and computer sciences courses required of all undergraduate majors in engineering.
Qualified applicants are encouraged to apply for predoctoral national competitive fellowships, especially those from the National Science Foundation. Applicants to the Ph.D. program should consult with their financial aid officers for information and applications.
The deadline for receiving applications is December 1, 2020. The Graduate Record Examination (GRE) is not required for admission to the M.S. or Ph.D. program in Bioengineering.
Further information and application instructions for all graduate degree programs may be obtained from Graduate Admissions.
Free Form Requisites
The University’s basic requirements for the Ph.D. degree are outlined in the Graduate Degrees section of this bulletin.
A student studying for the Ph.D. degree must complete a master’s degree (45 units) comparable to that of the Stanford M.S. degree in Bioengineering. Up to 45 units of master’s degree residency units may be counted towards the degree. The Ph.D. degree is awarded after the completion of a minimum of 135 units of graduate work as well as satisfactory completion of any additional University requirements. Students admitted to the Ph.D. program with an M.S. degree must complete at least 90 units of work at Stanford. The maximum number of transfer units is 45.
On the basis of the research interests expressed in their application, students are assigned an initial faculty adviser who assists them in choosing courses and identifying research opportunities. One of the most important goals of the first year is to identify a primary research adviser. The department does not require formal lab rotations, but students are encouraged to explore research activities in three or a maximum of four labs during their first academic year.
Prior to being formally admitted to candidacy for the Ph.D. degree, the student must demonstrate knowledge of Bioengineering fundamentals and a potential for research by passing a qualifying oral examination before the end of the second year.
In the beginning of the second year, the student is required to select a quantitative topic and a biology/medicine topic on which to be examined. Approximately one month before the exam, the student must submit an application containing items including a curriculum vitae, 2-3 page research project proposal, and transcript to the student services office. The exams are taken during a two-day period in Spring Quarter for all students. More information about the exam may be obtained from the student services office.
Successfully passing the qualifying exam, as well as completing the master's degree requirements, is required for students to advance to candidacy. Advancement to candidacy by University requirements must occur by the end of the Summer of the second year. Thus, all required master's degree coursework must be completed during the first two years of graduate study. Students who transfer master’s degree residency units to the Bioengineering Ph.D. degree are still required to fulfill the core course and core seminar requirements. In cases where students have already completed an equivalent course as part of their master’s degree, they may submit a petition to the graduate studies committee to have their previous coursework applied to the core bioengineering course requirement.
In addition to the course requirements of the M.S. degree, doctoral candidates must complete a minimum of 15 additional units of approved formal course work (excluding research, directed study, and seminars). Finally, serving as a teaching assistant for two courses is a requirement for the Ph.D. in Bioengineering. Both the 15 additional units and the teaching assistant requirement must be completed before the end of the 3rd year.
Dissertation Reading Committee
Each Ph.D. candidate is required to establish a reading committee for the doctoral dissertation within six months after passing the department’s Ph.D.. qualifying exams. Thereafter, the student should consult frequently with all members of the committee about the direction and progress of the dissertation research, no less than once per year.
A dissertation reading committee consists of the principal dissertation adviser and at least two other readers. Reading committees in Bioengineering may include faculty from another department. It is required that two members of the Bioengineering faculty, including primary and/or courtesy faculty be on each reading committee. The initial committee and any subsequent changes must be officially approved by the Department Chair.
University Oral and Dissertation
The Ph.D. candidate is required to take the University oral examination after the dissertation is substantially completed (with the dissertation draft in writing) but before final approval. The examination consists of a public presentation of dissertation research, followed by substantive private questioning on the dissertation and related fields by the University oral committee (four selected faculty members, plus a chair from another department). Once the oral has been passed, the student finalizes the dissertation for reading committee review and final approval.
Program Policies
External Credit Policies
N/A
Advising Expectations
The Department of Bioengineering is committed to providing academic advising in support of graduate student scholarly and professional development. When most effective, this advising relationship entails collaborative and sustained engagement by both the adviser and the advisee. As a best practice, advising expectations should be periodically discussed and reviewed to ensure mutual understanding. Both the adviser and the advisee are expected to maintain professionalism and integrity.
Graduate students are active contributors to the advising relationship, proactively seeking academic and professional guidance and taking responsibility for informing themselves of policies and degree requirements for their graduate program.
For a statement of University policy on graduate advising, see the "Graduate Advising" section of this bulletin.
Faculty advisers guide students in key areas such as selecting courses, designing and conducting research, developing of teaching pedagogy, navigating policies and degree requirements, and exploring academic opportunities and professional pathways. The department’s graduate handbook provides information and suggested timelines for advising meetings in the different stages of the doctoral program.
Ph.D. students are initially assigned a program adviser on the basis of the interests expressed in their application. This faculty member provides initial guidance in course selection, in exploring academic opportunities and professional pathways, and in identifying doctoral research opportunities.
Students identify their doctoral research/thesis adviser prior to the end of the first year of study. The research adviser assumes primary responsibility for the future direction of the student, taking on the roles previously filled by the program adviser, and ultimately directs the student’s dissertation. Most students find an adviser from among the primary faculty members of our department. However, the research adviser may be a faculty member from another Stanford department who is a member of the Academic Council, familiar with supervising doctoral students, and able to provide both advising and funding for the duration of the doctoral program. When the research adviser is from outside our department, the student must identify reading committee members from the BioE faculty.
MCL faculty may not be the primary advisers of students. Although a co-adviser from the MCL line is permissible in some situations, the primary adviser must provide at least 50% of the mentoring for the student. Evidence that a student is receiving greater than 50% of mentoring from the primary adviser include: full attendance of lab meetings, regular one-on-one meetings, dedicated space in the primary adviser's lab, funding provided by the primary adviser, and research being performed in an area that is of current relevance to the primary adviser. Advising situations that do not meet these criteria are subject to review by the graduate studies committee.
Throughout the Ph.D., each student is required to fill out an annual Individual Developmental Plan (IDP), usually in the Summer. The IDP is then discussed with the research adviser, as a way to facilitate: advising the student, both during and beyond the PhD; establishing clear expectations on both sides with respect to degree progress and timely graduation; and emphasizing the importance of wellness in graduate school, together with access to University wellness resources.
The Faculty Director of Graduate Studies (DGS) is also available during the academic year by email and during office hours. The department’s student services office is also an important part of the doctoral advising team: they inform students and advisers about University and department requirements, procedures, and opportunities, and they maintain the official records of advising assignments and approvals. Students are encouraged to talk with the DGS and the student services office as they consider adviser selection or for guidance in working with their adviser(s).
Learning Outcomes
Program Learning Outcomes
The purpose of the master’s program is to provide students with the knowledge and skills necessary for a professional career or doctoral studies. This is done through coursework with specialization in an area of the field, including biomedical computation, regenerative medicine and tissue engineering, molecular and cell bioengineering, biomedical imaging, and biomedical devices.
The PhD is conferred upon candidates who have demonstrated substantial scholarship and the ability to conduct independent research. Through coursework and guided research, the program prepares students to make original contributions in Bioengineering and related fields.